Graduate

BME 200 Research and Teaching in Bioinformatics

Basic teaching techniques for teaching assistants, including responsibilities and rights of teaching assistants, resource materials, computer security, leading discussion or lab sessions, presentation techniques, maintaining class records, electronic handling of homework, and grading. Examines research and professional training, including use of library and online databases, technical typesetting, writing journal and conference papers, publishing in bioinformatics, giving talks in seminars and conferences, and ethical issues in science and engineering. Required for all teaching assistants.

Credits

3

Instructor

Joshua Stuart, Kevin Karplus, Richard Edward Green

Requirements

Enrollment is restricted to graduate students.

Quarter offered

Fall

BME 233 A Technological History of Antibody Genetics

Covers the genetics of antibody formation and the histories of immunology and genetics. Students read and analyze seminal papers on antibody genetics.

Credits

5

Instructor

Christopher Vollmers

Requirements

Enrollment is restricted to graduate students.

Quarter offered

Winter

BME 235 Banana Slug Genomics

Students will assemble and annotate the banana slug genome (Ariolimax dolichophallus) from next-generation sequencing data. Students also will explore the capabilities of the latest next-generation bioinformatics tools and write their own as needed.

Credits

5

Instructor

The Staff, Kevin Karplus

Requirements

Prerequisite(s): BME 205 or graduate status. Seniors who have taken BME 110 and a computer programming course may enroll with permission of instructor.

Repeatable for credit

Yes

BME 281K Seminar on Protein Structure Prediction

Weekly seminar series covering topics of current computational and experimental research in protein structure prediction. Current research work and literature in this area discussed. Students lead some discussions and participate in all meetings.

Credits

2

Instructor

Kevin Karplus

Requirements

Enrollment is restricted to graduate students; qualified undergraduates may enroll with permission of instructor.

Repeatable for credit

Yes

Quarter offered

Winter, Spring